PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.312190.1
Common NameCsa_3G893390, LOC101222621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 326aa    MW: 36464.5 Da    PI: 4.6521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.312190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12160203654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A+eY+k+L
  Cucsa.312190.1 160 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYVKEL 203
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15158216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9160203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15161217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-5161208No hitNo description
CDDcd048731.37E-5251292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELNEHYLLE EVLGLRRSEV MNWELAIATE MNGWNFDCSD SLPMDQQHND LAYLLNGEDQ  60
YLGTEAAMAA AGSTGDSMSY STMAETPGGS SFEVYNIRSM EEEELGILED EIHNLEVQAN  120
NDSYYCKVEP VVVDQSPAKM LPIFKTGGSK KLQGQPSKNL MAERRRRKRL NDRLSMLRSI  180
VPKISKMDRT AILADAIEYV KELMERIQIL EKEISNSNKL GILRSHIVKP NNEYLVRNSA  240
KFNVERREEE TKIEICCAAK PGLLLSTVNT LEAMGLDIQH CVISCFNDFA IQASCSPGNE  300
VGRMVSTEEV KQALFENAGY GGKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-140LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-140LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136242.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL18e-73BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0A0LGY70.0A0A0A0LGY7_CUCSA; Uncharacterized protein
STRINGGLYMA14G36370.13e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-74beta HLH protein 93
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]